How do I specify to merge my files in my Sample File?
When filling in the Sample File, it is possible to specify that different FASTQ files need to be merged together for the analysis.
To do so, please use the same sample name (in the Sample_Name column) for all the FASTQ files that need to be merged, and ONLY for the FASTQ files to merge.
Do not use the same sample name for different FASTQ files that need to be analyzed as separate samples.