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What output files are provided with the in-house data analysis?

After data analysis is complete, Lexogen will provide a PDF report which includes mapping statistics, RNA-seq quality metrics, correlation analyses, PCA plots, and pairwise comparisons.

The output files resulting from the data analysis will also be available for download and include:

  • Trimmed .fastq files

  • Aligned .bam files

  • Collapsed aligned .bam files (if UMIs are included in the library prep)

  • Gene counting .tsv files

  • Normalized count .tsv files and pairwise summary.txt files for each condition comparison (when differential gene expression is specified)

  • Multiqc reports (.html)

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