What output files are provided with the in-house data analysis?

After data analysis is complete, Lexogen will provide a PDF report which includes mapping statistics, RNA-seq quality metrics, correlation analyses, PCA plots, and pairwise comparisons.

The output files resulting from the data analysis will also be available for download and include:

• Trimmed .fastq files

• Aligned .bam files

• Collapsed aligned .bam files (if UMIs are included in the library prep)

• Gene counting .tsv files

• Normalized count .tsv files and pairwise summary.txt files for each condition comparison (when differential gene expression is specified)

• Multiqc reports (.html)