How can I analyze my QuantSeq FFPE data?
Our QuantSeq FFPE kit comes with a voucher code to access free data analysis on our web-based platform Kangooroo.
For more information, please visit our website Lexogen - Kangooroo and our online Kangooroo Data Analysis FAQs!
If additional voucher codes are needed, please contact us at sales@lexogen.com.
NOTE: Our QuantSeq FFPE pipeline utilizes paired-end data only. Please, upload both Reads (1 and 2) FASTQ files for your data analysis!
If you prefer to analyze your QuantSeq FFPE data on your own, as reference you can find below the general workflow with key steps to successfully analysis your QuantSeq data!
Key steps of the general workflow to use to analyze QuantSeq FFPE data:
QuantSeq FFPE |
|---|
UMI extraction |
Trimming |
Mapping |
UMI collapsing |
Gene Read counting |
Differential Expression Analysis |