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What output files do I get with Kangooroo?

The result files available for download include:

  • UMI_extracted .fastq files (If UMIs are included in the library prep)

  • Trimmed .fastq files with fastqc (.html) and stats reports

  • Aligned .bam files with alignment report

  • Collapsed aligned .bam files and stats reports (if UMIs are included in the library prep)

  • Coverage .bw files

  • Gene counting .tsv files

  • Normalized counts .tsv files

  • Pairwise summary .txt and results .tsv files for each condition comparison (when differential gene expression is specified)

  • Multiqc reports (.html), plots (png) and tables (.txt)

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