What species are available for my data analysis?

Analysis pipelines for sequencing data are currently available for the species listed in the table below.

NOTE: If you wish to upload a new reference and/or a new version of the genome, please see this FAQ: Can I add new genome references for my data analysis with Kangooroo?.

Scientific name	Common name	Source	Link
Amphimedon queenslandica	Sponge	Ensembl release 55	http://ftp.ensemblgenomes.org/pub/release-55/metazoa/gtf/amphimedon_queenslandica/
Arabidopsis halleri	Arabidopsis	Ensembl release 55	http://ftp.ensemblgenomes.org/pub/release-55/plants/gtf/arabidopsis_halleri/
Arabidopsis thaliana	Arabidopsis Thale cress	Ensembl release 55	http://ftp.ensemblgenomes.org/pub/release-55/plants/gtf/arabidopsis_thaliana/
Bartonella henselae	Bartonella	Ensembl release 55	https://ftp.ensemblgenomes.ebi.ac.uk/pub/bacteria/release-55/gtf/bacteria_0_collection/bartonella_henselae_str_houston_1_gca_000046705/
Bos taurus	Cow	Ensembl release 108	https://ftp.ensembl.org/pub/release-108/gtf/bos_taurus/
Brachypodium distachyon	Purple False Brome	Ensembl release 55	http://ftp.ensemblgenomes.org/pub/release-55/plants/gtf/brachypodium_distachyon/
Caenorhabditis elegans	Nematode Roundworm	Ensembl release 107	https://ftp.ensembl.org/pub/release-107/gtf/caenorhabditis_elegans/
Candida albicans	Yeast	Ensembl release 55	http://ftp.ensemblgenomes.org/pub/release-55/fungi/gtf/candida_albicans/
Canis lupus familiaris	Dog	Ensembl release 107	https://ftp.ensembl.org/pub/release-107/gtf/canis_lupus_familiaris/
Capra hircus	Goat	Ensembl release 108	https://ftp.ensembl.org/pub/release-108/gtf/capra_hircus/
Chrysemys picta bellii	Painted Turtle	Ensembl release 108	https://ftp.ensembl.org/pub/release-108/gtf/chrysemys_picta_bellii/
COVID19 (SARS-CoV-2)	COVID19	Ensembl MN908947.3	http://ftp.ensemblgenomes.org/pub/viruses/gtf/sars_cov_2/
Cricetulus griseus	CHO-K1 Cell Line	Ensembl release 108	https://ftp.ensembl.org/pub/release-108/gtf/cricetulus_griseus_chok1gshd/
Danio rerio	Zebrafish	Ensembl release 108	https://ftp.ensembl.org/pub/release-108/gtf/danio_rerio/
Daphnia pulex	Water flea	NCBI refseq GCF_021134715.1_ASM2113471v1	https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_021134715.1/
Drosophila melanogaster	Fruit Fly	Ensembl release 108	https://ftp.ensembl.org/pub/release-108/gtf/drosophila_melanogaster/
Elaeis guineensis	African Oil Palm	NCBI refseq GCF_000442705.1	https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000442705.1/
Felis catus	Cat	Ensembl release 107	https://ftp.ensembl.org/pub/release-107/gtf/felis_catus/
Fusarium oxysporum	Fungus	Ensembl release 55	http://ftp.ensemblgenomes.org/pub/release-55/fungi/gtf/fusarium_oxysporum/
Gallus gallus	Chicken	Ensembl release 108	https://ftp.ensembl.org/pub/release-108/gtf/gallus_gallus/
Homo sapiens	Human	Ensembl release 107	https://ftp.ensembl.org/pub/release-107/gtf/homo_sapiens/
Hordeum vulgare	Barley	Ensembl release 55	http://ftp.ensemblgenomes.org/pub/release-55/plants/gtf/hordeum_vulgare/
Kluyveromyces lactis	Yeast	NCBI refseq GCF_000002515.2	https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000002515.2/
Mus musculus	Mouse	Ensembl release 107	https://ftp.ensembl.org/pub/release-107/gtf/mus_musculus/
Naegleria fowleri	Brain-Eating Amoeba	NCBI refseq GCF_008403515.1_ASM840351v1	https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_008403515.1/
Nematostella vectensis	Starlet Sea Anemone	NCBI refseq GCF_932526225.1_jaNemVect1.1	https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_932526225.1/
Oncorhynchus mykiss	Rainbow trout	Ensembl release 108	https://ftp.ensembl.org/pub/release-108/gtf/oncorhynchus_mykiss/
Oryctolagus cuniculus	Rabbit	Ensembl release 108	https://ftp.ensembl.org/pub/release-108/gtf/oryctolagus_cuniculus/
Oryza sativa	Rice	Ensembl release 55	http://ftp.ensemblgenomes.org/pub/release-55/plants/gtf/oryza_sativa/
Populus trichocarpa	Western Balsam Poplar Tree	Ensembl release 55	http://ftp.ensemblgenomes.org/pub/release-55/plants/gtf/populus_trichocarpa/
Pseudomonas aeruginosa	Pseudomonas	NCBI refseq GCF_000006765.1_ASM676v1.	https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000006765.1/
Rattus norvegicus	Rat	Ensembl release 107	https://ftp.ensembl.org/pub/release-107/gtf/rattus_norvegicus/
Saccharomyces cerevisiae	Baker’s Yeast	Ensembl release 108	https://ftp.ensembl.org/pub/release-108/gtf/saccharomyces_cerevisiae/
Salmo salar	Salmon	Ensembl release 108	https://ftp.ensembl.org/pub/release-108/gtf/salmo_salar/
Solanum lycopersicum	Tomato	Ensembl release 55	http://ftp.ensemblgenomes.org/pub/release-55/plants/gtf/solanum_lycopersicum/
Solanum tuberosum	Potato	Ensembl release 55	http://ftp.ensemblgenomes.org/pub/release-55/plants/gtf/solanum_tuberosum/
Sorghum bicolor	Sorghum	Ensembl release 55	http://ftp.ensemblgenomes.org/pub/release-55/plants/gtf/sorghum_bicolor/
Sus scrofa	Pig	Ensembl release 108	https://ftp.ensembl.org/pub/release-108/gtf/sus_scrofa/
Theobroma cacao criollo	Cacao Tree	Ensembl release 55	http://ftp.ensemblgenomes.org/pub/release-55/plants/gtf/theobroma_cacao_criollo/
Yarrowia lipolytica	Fungus	Ensembl release 55	http://ftp.ensemblgenomes.org/pub/release-55/fungi/gtf/yarrowia_lipolytica/
Zea mays	Maize/Corn	Ensembl release 55	http://ftp.ensemblgenomes.org/pub/release-55/plants/gtf/zea_mays/