Analysis pipelines for small RNA sequencing data are currently available for the species listed in the table below.
NOTE: It is not possible to upload on your own a new reference and/or a new version of the genome you would like to use for the data analysis.
|
Scientific name |
Common Name |
File name |
md5sum |
|
Acyrthosiphon pisum |
Pea aphid |
acyrthosiphon_pisum_pea_aphid_mirbase_22.1.tar.gz |
dc45da20c3d6828bcffa3721c7a4722c |
|
Aedes aegypti |
Dengue Mosquito |
aedes_aegypti_yellow_fever_mosquito_mirbase_22.1.tar.gz |
7c056d0ebb161515980ca594cf919fed |
|
Aegilops tauschii |
Goatgrass |
aegilops_tauschii_goatgrass_mirbase_22.1.tar.gz |
55f602af9c1ef8d0596650dda9617781 |
|
Amborella trichopoda |
Amborella |
amborella_trichopoda_amborella_mirbase_22.1.tar.gz |
d69a3eecd3e7f5eee0ff96a2922f726c |
|
Anolis carolinensis |
Green Anole (lizard) |
anolis_carolinensis_green_anole_mirbase_22.1.tar.gz |
3873c9e1730f1add1a247b761beb288e |
|
Anopheles gambiae |
African malaria mosquito |
anopheles_gambiae_mosquito_mirbase_22.1.tar.gz |
cee0d904fddf048172af2d52ab6c3ff0 |
|
Apis mellifera |
Honey bee |
apis_mellifera_honey_bee_mirbase_22.1.tar.gz |
0eba0faf625b27a3fcde1f1491d7070b |
|
Arabidopsis lyrata |
Arabidopsis |
arabidopsis_lyrata_lyrate_rockcress_mirbase_22.1.tar.gz |
d5b7b1a2a86221af95a7d6c4c127d544 |
|
Arabidopsis thaliana_ |
Arabidopsis Thale cress |
arabidopsis_thaliana_thale_cress_mirbase_22.1.tar.gz |
ad88e8f9266bc59c9cb62482fd58aa0f |
|
Bombyx mori |
Silkmoth |
bombyx_mori_domestic_silkworm_mirbase_22.1.tar.gz |
662517981abc5c62f1c694fea46c3598 |
|
Bos taurus |
Cow |
bos_taurus_domestic_cattle_mirbase_22.1.tar.gz |
4855dd2275a1697b7f532c9d4a245daa |
|
Bovine leukemia virus |
Bovine leukemia virus |
bovine_leukemia_virus_bovine_leukemia_virus_mirbase_22.1.tar.gz |
44bb6ec211c6d8184f139dcb07f58dbc |
|
Brachypodium distachyon |
Purple False Brome |
brachypodium_distachyon_stiff_brome_mirbase_22.1.tar.gz |
b4e28d0f951c214bbf8883f4382a0866 |
|
Branchiostoma floridae |
Florida lancelet |
branchiostoma_floridae_florida_lancelet_mirbase_22.1.tar.gz |
dd545b086622bf5c5d853934dac51eab |
|
Brassica napus |
Rapeseed, rape, colza |
brassica_napus_rape_mirbase_22.1.tar.gz |
2151d5548ed56617ff3bc2bf156c2b7c |
|
Brassica rapa |
Field mustard (wild turnip) |
brassica_rapa_field_mustard_mirbase_22.1.tar.gz |
f438a28c2788836886be8c5cbe7c6eb1 |
|
Brugia malayi |
Malayan filarial worm |
brugia_malayi_malayan_filaria_mirbase_22.1.tar.gz |
b5e8ac76f64ea779ba4802080108ac7f |
|
Caenorhabditis brenneri |
Nematode Roundworm |
caenorhabditis_brenneri_nematode_worm_mirbase_22.1.tar.gz |
525673faaf776aca59ca7736677e71af |
|
Caenorhabditis briggsae |
Nematode Roundworm |
caenorhabditis_briggsae_nematode_worm_mirbase_22.1.tar.gz |
965518fc6bc5e70f5c46a46ae9ae4148 |
|
Caenorhabditis elegans |
Nematode Roundworm |
caenorhabditis_elegans_nematode_worm_mirbase_22.1.tar.gz |
5d3eeb636a4ae40b387fa058219321c8 |
|
Caenorhabditis remanei |
Nematode Roundworm |
caenorhabditis_remanei_nematode_worm_mirbase_22.1.tar.gz |
1163c71270b0017e243076da33177d5f |
|
Canis familiaris |
Dog |
35f6158374f066fb805d9f40acdb8afd |
|
|
Capitella teleta |
Bristle worm |
capitella_teleta_bristle_worm_mirbase_22.1.tar.gz |
9c7298e177d50e13946741f164c5ff1f |
|
Capra hircus |
Goat |
capra_hircus_goat_mirbase_22.1.tar.gz |
88b8589af928ceaf1a7ae7ea2439e75e |
|
Chlamydomonas reinhardtii |
Green yeast |
chlamydomonas_reinhardtii_green_yeast_mirbase_22.1.tar.gz |
2227d74b236800ffab56580b0491bfd6 |
|
Ciona intestinalis |
Vase tunicate (sea squirt) |
ciona_intestinalis_vase_tunicate_mirbase_22.1.tar.gz |
cd975b7574d93344b0a0eca270707f00 |
|
Ciona savignyi |
Solitary sea squirt |
ciona_savignyi_pacific_transparent_sea_squirt_mirbase_22.1.tar.gz |
054af2dd879562db9543a1611dafed04 |
|
Citrus sinensis |
Sweet orange |
citrus_sinensis_sweet_orange_mirbase_22.1.tar.gz |
850293ed669aed73e88d3d9d822a49c5 |
|
Cricetulus griseus |
Chinese hamster |
cricetulus_griseus_chinese_hamster_mirbase_22.1.tar.gz |
0c4007a5486569198160cbc9554106d2 |
|
Culex quinquefasciatus_ |
Southern house mosquito |
culex_quinquefasciatus_southern_house_mosquito_mirbase_22.1.tar.gz |
b972193a91a13be4b584f8f345e399fe |
|
Danio rerio |
Zebrafish |
danio_rerio_zebrafish_mirbase_22.1.tar.gz |
6ee3e67b40bb9cf54896724dc188c68c |
|
Daphnia pulex |
Water flea |
daphnia_pulex_common_water_flea_mirbase_22.1.tar.gz |
98aac0e88c440ee33a0f8dff48352b08 |
|
Dictyostelium discoideum |
Slime mold |
dictyostelium_discoideum__mirbase_22.1.tar.gz |
2b34a88b9eed8e8f18440fa1a2e6bc5f |
|
Drosophila ananassae |
Fruit fly |
drosophila_ananassae_fruit_fly_mirbase_22.1.tar.gz |
4dc9b3ca92146424983f96f67cfd5d6c |
|
Drosophila erecta |
Fruit fly |
drosophila_erecta_fruit_fly_mirbase_22.1.tar.gz |
892d3ea0faf1ffa019711239fdb971de |
|
Drosophila grimshawi |
Hawaiian fruit fly |
drosophila_grimshawi_hawaiian_fruit_fly_mirbase_22.1.tar.gz |
ea8690707cf143e39f4645dc5b95eb25 |
|
Drosophila melanogaster |
Fruit Fly |
drosophila_melanogaster_fruit_fly_mirbase_22.1.tar.gz |
3c0d67bd222a316d61bb9aadc9cf82eb |
|
Drosophila mojavensis |
Mojave fruit fly |
drosophila_mojavensis_mojave_fruit_fly_mirbase_22.1.tar.gz |
c59711e5180b73503730482000ed31dd |
|
Drosophila persimilis |
Fruit Fly |
drosophila_persimilis_fruit_fly_mirbase_22.1.tar.gz |
e571975762cdbb2bb3fd0afc3d95ad8e |
|
Drosophila pseudoobscura |
Fruit Fly |
drosophila_pseudoobscura_fruit_fly_mirbase_22.1.tar.gz |
7a20e2ff7163a1d8560493e4e664e5e9 |
|
Drosophila sechellia_ |
Fruit Fly |
drosophila_sechellia_fruit_fly_mirbase_22.1.tar.gz |
117609abe10ee8de47a34d2708af0e47 |
|
Drosophila simulans |
Fruit Fly |
drosophila_simulans_fruit_fly_mirbase_22.1.tar.gz |
5010580c32624b4017e5621c0f2ec454 |
|
Drosophila virilis |
Fruit Fly |
drosophila_virilis_fruit_fly_mirbase_22.1.tar.gz |
01a52b3463b062435fcc29da23623416 |
|
Drosophila willistoni |
Fruit Fly |
drosophila_willistoni_fruit_fly_mirbase_22.1.tar.gz |
df828bbefbf3540ac6d06fb671820b4c |
|
Drosophila yakuba |
Fruit Fly |
drosophila_yakuba_fruit_fly_mirbase_22.1.tar.gz |
6fac763ddd66e343a6f24fb1154574bf |
|
Echinococcus granulosus |
Tapeworm (dog) |
echinococcus_granulosus_dog_tapeworm_mirbase_22.1.tar.gz |
244c87ec9697becbc0bc67873d48895f |
|
Echinococcus multilocularis |
Tapeworm (fox) |
echinococcus_multilocularis_fox_tapeworm_mirbase_22.1.tar.gz |
431d5952b2d144f473ef5b18d23cf27d |
|
Ectocarpus siliculosus |
Seaweed Brown algua |
ectocarpus_siliculosus_brown_seaweed_mirbase_22.1.tar.gz |
6d4e5a553841974242803b77e775f143 |
|
Epstein barr virus |
Epstein barr virus |
epstein_barr_virus_epstein-barr_virus_mirbase_22.1.tar.gz |
21011c754ee2486d418912a6100bf346 |
|
Eptesicus fuscus |
Big brown bat |
eptesicus_fuscus_big_brown_bat_mirbase_22.1.tar.gz |
0803cad6b05cb913183a2009134e28de |
|
Equus caballus |
Horse |
equus_caballus_horse_mirbase_22.1.tar.gz |
1d6679a41ab89ebe5695d360f008b48e |
|
Fugu rubripes |
Tiger puffer (Fish) |
fugu_rubripes_torafugu_mirbase_22.1.tar.gz |
9bf9003b9cb6119f941725aad1ed6a50 |
|
Gallus gallus |
Chicken |
gallus_gallus_chicken_mirbase_22.1.tar.gz |
1d29c7e34356e87210dc3a377f50c13b |
|
Glycine max |
Soybean |
glycine_max_soybean_mirbase_22.1.tar.gz |
6acbb1691ed6185ed4454fe87e65db44 |
|
Gorilla gorilla |
western gorilla |
gorilla_gorilla_western_gorilla_mirbase_22.1.tar.gz |
703009c16c55c7c9f7e2e654fb595673 |
|
Gossypium raimondii |
Peruvian cotton |
gossypium_raimondii_peruvian_cotton_mirbase_22.1.tar.gz |
e76669dcc82c4c7793f61c5eb77b6853 |
|
Heliconius melpomene |
Postman butterfly |
heliconius_melpomene_postman_butterfly_mirbase_22.1.tar.gz |
c0eb6214bcc94fce87f2991bc72a56cf |
|
Herpes B virus |
Macacine Herpes Virus |
herpes_b_virus_monkey_b_virus_mirbase_22.1.tar.gz |
047cda49a47cf159ebfa0d0b5969a748 |
|
Hevea brasiliensis |
Rubber tree |
hevea_brasiliensis_rubber_tree_mirbase_22.1.tar.gz |
12679440c4e1ee961c8039eac062188a |
|
Homo sapiens |
Human |
homo_sapiens_human_mirbase_22.1.tar.gz |
80f0a7b8003d818f2376e9e79edacbd6 |
|
Hordeum vulgare |
Barley |
hordeum_vulgare_barley_mirbase_22.1.tar.gz |
e4ad43a1f9d0a8521bc795154fac479a |
|
Human cytomegalovirus |
Human cytomegalovirus (CMV) |
human_cytomegalovirus_cmv_mirbase_22.1.tar.gz |
9a616325ec0eb24e35f46873165a3792 |
|
Ixodes scapularis |
Deer tick_ |
ixodes_scapularis_black-legged_tick_mirbase_22.1.tar.gz |
08140eb6ce126349e5e185c584770a6d |
|
Kaposi sarcoma-associated herpesvirus |
Kaposi sarcoma associated herpesvirus (human herpesvirus 8) |
kaposi_sarcoma-associated_herpesvirus_human_herpesvirus_8_mirbase_22.1.tar.gz |
2b708cea799ecf1caae31522a1eb63af |
|
Lottia gigantea |
Owl limpet (Sea snail) |
lottia_gigantea_owl_limpet_mirbase_22.1.tar.gz |
48edc485b269be95fd846041a3abd907 |
|
Lotus japonicus |
Miyakogusa |
lotus_japonicus_miyakogusa_mirbase_22.1.tar.gz |
4943facb1211d81bf30a0d1102d70675 |
|
Macaca mulatta |
Rhesus macaque |
macaca_mulatta_rhesus_monkey_mirbase_22.1.tar.gz |
ba88225b8d6da67e315d742db6a0bc70 |
|
Malus domestica |
Apple |
malus_domestica_apple_mirbase_22.1.tar.gz |
8cac165da4873f0344e8fb17bc9d34ce |
|
Manduca sexta |
Tobacco hornworm |
manduca_sexta_tobacco_hornworm_mirbase_22.1.tar.gz |
7fb4a41a9039c9d265b462377b117106 |
|
Manihot esculenta |
Cassava |
manihot_esculenta_cassava_mirbase_22.1.tar.gz |
27bbb58c27454a2a19a224da9ded6f8a |
|
Mareks disease virus type 1 |
Mareks disease virus type 1 |
mareks_disease_virus_type_1_mareks_disease_virus_mirbase_22.1.tar.gz |
4ca88be4d9bdb7215c502ec6ac51efec |
|
Medicago truncatula |
Barrel medic |
medicago_truncatula_barrel_medic_mirbase_22.1.tar.gz |
069517e7f95260c27ce8635bab3c1024 |
|
Monodelphisdomestica |
Gray short-tailed opossum |
monodelphis_domestica_gray_short-tailed_opossum_mirbase_22.1.tar.gz |
1b5cf80517f90ba7328adc253558adc0 |
|
Mouse gammaherpesvirus 68 |
Murid herpesvirus 4 |
mouse_gammaherpesvirus_68_murine_gammaherpesvirus_68_mirbase_22.1.tar.gz |
8c95beada26606eaad40e17eab5ee63a |
|
Mus musculus |
Mouse |
mus_musculus_house_mouse_mirbase_22.1.tar.gz |
6e2704040cb43f8113c7f35ca370b1e9 |
|
Nasonia vitripennis |
Jewel wasp |
nasonia_vitripennis_jewel_wasp_mirbase_22.1.tar.gz |
e6ca0083c2a6c2bd08573c5d7bf87ec6 |
|
Nematostella vectensis |
Starlet Sea Anemone |
nematostella_vectensis_starlet_sea_anemone_mirbase_22.1.tar.gz |
03d94a27bf1e97fe24d1ba106c7347ec |
|
Ophiophagushannah |
King cobra |
ophiophagus_hannah_king_cobra_mirbase_22.1.tar.gz |
efbe11844587779068fd891be3078472 |
|
Ornithorhynchus anatinus |
Platypus |
ornithorhynchus_anatinus_platypus_mirbase_22.1.tar.gz |
055221fb3e142e8fdbfe20278fa4c0a8 |
|
Oryctolagus cuniculus |
Rabbit |
oryctolagus_cuniculus_rabbit_mirbase_22.1.tar.gz |
aa7e9ad0b79348a2caa84de77215db63 |
|
Oryza sativa |
Rice |
oryza_sativa_asian_cultivated_rice_mirbase_22.1.tar.gz |
06cbf2985c8483d5155d0984f504549b |
|
Oryzias latipes |
Japanese rice fish |
oryzias_latipes_japanese_medaka_mirbase_22.1.tar.gz |
d27193d2bf9256829c9c26f636d1c3ae |
|
Ovis aries |
Sheep |
ovis_aries_sheep_mirbase_22.1.tar.gz |
8337c653a49d63df198e78080af04033 |
|
Panagrellus redivivusar |
microworm |
panagrellus_redivivus_microworm_mirbase_22.1.tar.gz |
afdd8f5d257b40af8d3ecac65f8c5633 |
|
Pan paniscus |
Bonobo (Monkey) |
pan_paniscus_bonobo_mirbase_22.1.tar.gz |
b7e0555ef230aaf7fa9425c27ce6ae5f |
|
Pan troglodytes |
Chimpanzee |
pan_troglodytes_chimpanzee_mirbase_22.1.tar.gz |
4a1892a061b930c5eb160a9d860772bb |
|
Petromyzonmarinus |
Sea Lamprey |
petromyzon_marinus_sea_lamprey_mirbase_22.1.tar.gz |
9baedc21d9c3a290b84169b6d9b8bec9 |
|
Phaeodactylum tricornutum |
Marine diatom |
phaeodactylum_tricornutum_marine_diatom_mirbase_22.1.tar.gz |
36b74c23f8d56c314ffec77d16b79666 |
|
Phaseolus vulgaris |
Common bean |
phaseolus_vulgaris_common_bean_mirbase_22.1.tar.gz |
ce3fb0e6d8a37dce390fb4c315a55a1e |
|
Physcomitrella patens |
Spreading earthmoss |
physcomitrella_patens_spreading_earthmoss_mirbase_22.1.tar.gz |
d83b2b44da3a0d5d5792b3b951a5ce7d |
|
Picea abies |
Norway spruce |
picea_abies_norway_spruce_mirbase_22.1.tar.gz |
57b92e91a4d9c4bbfe7d4bb2a700b3c2 |
|
Plutella xylostella |
Diamondbackmoth |
plutella_xylostella_diamondback_moth_mirbase_22.1.tar.gz |
485f4a20f99f1d831c96f7aef95be82b |
|
Pongo pygmaeus |
Bornean orangutan |
pongo_pygmaeus_bornean_orangutan_mirbase_22.1.tar.gz |
53dcfcf78b3d43530dfc7e8d1957aab1 |
|
Populus trichocarpa |
Western Balsam Poplar Tree |
populus_trichocarpa_black_cottonwood_mirbase_22.1.tar.gz |
54120de258b44efbfaf4d38b1c6e78d7 |
|
Pristionchus pacificus |
Shark-tooth nematode |
pristionchus_pacificus_shark-tooth_nematode_mirbase_22.1.tar.gz |
5c543ec6133c815ffbbec6bc9b5c2fb9 |
|
Prunus persica_ |
Peach |
prunus_persica_peach_mirbase_22.1.tar.gz |
85e5577857e28e415e80fd07ad2f433c |
|
Pseudorabies virus aujeszkys |
Pseudorabies virus (Aujeszkys´disease) |
pseudorabies_virus_aujeszkys_disease_virus_mirbase_22.1.tar.gz |
1df45e40c6673350d184e58913a5f64e |
|
Rattus norvegicus |
Rat |
rattus_norvegicus_norway_rat_mirbase_22.1.tar.gz |
bad3e1453783f927df5d4ac888455d48 |
|
Rhesus monkey rhadinovirus gamma |
Rhesus monkey rhadinovirus (RRV) |
rhesus_monkey_rhadinovirus_gamma-2_herpesvirus_mirbase_22.1.tar.gz |
803f9565cf6478093b12e68fe18037d7 |
|
Ricinus communis |
Castor oil plant |
ricinus_communis_castor_oil_plant_mirbase_22.1.tar.gz |
f4cd1da4d37b54b4256e3bd934b6c719 |
|
Saccoglossus kowalevskii |
Virginia acorn worm |
saccoglossus_kowalevskii_acorn_worm_mirbase_22.1.tar.gz |
cfc18a9400ce401491f4ad4b98b1bdc3 |
|
Sarcophilus_harrisii |
Tasmanian devil |
sarcophilus_harrisii_tasmanian_devil_mirbase_22.1.tar.gz |
8cabbb293b48facf9cff671f93ba138c |
|
Schistosoma japonicum |
Bilharziose |
schistosoma_japonicum_blood_fluke_mirbase_22.1.tar.gz |
3af6cace0a714cfdfbbdaa22afa28f82 |
|
Schistosoma mansoni |
Saugwurm (trematode) |
schistosoma_mansoni_blood_fluke_mirbase_22.1.tar.gz |
038ddec053f42d64a5a452429d7efe45 |
|
Schmidtea mediterranea |
Freshwater planarian |
schmidtea_mediterranea_freshwater_planarian_mirbase_22.1.tar.gz |
4552afe0c3275bec30cee2463bff42e3 |
|
Solanum lycopersicum |
Tomato |
solanum_lycopersicum_tomato_mirbase_22.1.tar.gz |
e55b693a250eafb4cb7b091e1f241059 |
|
Solanum tuberosum |
Potato |
solanum_tuberosum_potato_mirbase_22.1.tar.gz |
21619bd92ecabb0ce2ddf411936ed299 |
|
Sorghum bicolor |
Sorghum |
sorghum_bicolor_sorghum_mirbase_22.1.tar.gz |
bd643900a96af363e24b7bf889ffc58f |
|
Strongylocentrotus purpuratus |
Purple Sea urchin |
strongylocentrotus_purpuratus_purple_sea_urchin_mirbase_22.1.tar.gz |
2647d86f0109ec15a3146e3a37700257 |
|
Strongyloides ratti |
Threadworm (rat) |
strongyloides_ratti_rat_threadworm_mirbase_22.1.tar.gz |
188d40a9fcb6df074ea2149b59e36132 |
|
Sus scrofa |
Pig |
sus_scrofa_pig_mirbase_22.1.tar.gz |
3bd49ae86ef63a934125d80feeb9fbbc |
|
Taeniopygia_guttata zebra |
Zebra finch |
taeniopygia_guttata_zebra_finch_mirbase_22.1.tar.gz |
a2a7f5995494d21d67a52565f9e9246d |
|
Tetraodon nigroviridis |
Green_puffer (fish) |
tetraodon_nigroviridis_spotted_green_pufferfish_mirbase_22.1.tar.gz |
d8d1878a89b347a96096c0db73fbd4e9 |
|
Tribolium castaneum |
Red flour beetle |
tribolium_castaneum_red_flour_beetle_mirbase_22.1.tar.gz |
fe06a535718e329d3096b76256e4225f |
|
Triticum aestivum |
Bread Wheat |
triticum_aestivum_bread_wheat_mirbase_22.1.tar.gz |
4e3d9af6b39b3f14947e71e595e15e0c |
|
Tupaia chinensis |
Chinese tree shree |
tupaia_chinensis_chinese_tree_shrew_mirbase_22.1.tar.gz |
83190201d9d10851569bcaa0d965673a |
|
Vitis vinifera_ |
Grape vine |
vitis_vinifera_grape_vine_mirbase_22.1.tar.gz |
4b08b3d5b82c50b53a9142ea058b8586 |
|
Xenopus laevis |
African clawed frog |
xenopus_laevis_african_clawed_frog_mirbase_22.1.tar.gz |
c7494d83a7b5ba6c8408d87cd647fba0 |
|
Xenopus tropicalis |
Tropical clawed frog |
xenopus_tropicalis_tropical_clawed_frog_mirbase_22.1.tar.gz |
a313e5bf1347ae2e67292e70b64ad0f6 |
|
Zea mays |
Maize/Corn |
zea_mays_maize_mirbase_22.1.tar.gz |
29ec70e7ba936ae2ac52b7f7aaad51cb |