What species are available for my small RNA data analysis?
Analysis pipelines for small RNA sequencing data are currently available for the species listed in the table below.
NOTE: It is not possible to upload on your own a new reference and/or a new version of the genome you would like to use for the data analysis.
Scientific name | Common Name | File name | md5sum |
Acyrthosiphon pisum | Pea aphid | acyrthosiphon_pisum_pea_aphid_mirbase_22.1.tar.gz | dc45da20c3d6828bcffa3721c7a4722c |
Aedes aegypti | Dengue Mosquito | aedes_aegypti_yellow_fever_mosquito_mirbase_22.1.tar.gz | 7c056d0ebb161515980ca594cf919fed |
Aegilops tauschii | Goatgrass | aegilops_tauschii_goatgrass_mirbase_22.1.tar.gz | 55f602af9c1ef8d0596650dda9617781 |
Amborella trichopoda | Amborella | amborella_trichopoda_amborella_mirbase_22.1.tar.gz | d69a3eecd3e7f5eee0ff96a2922f726c |
Anolis carolinensis | Green Anole (lizard) | anolis_carolinensis_green_anole_mirbase_22.1.tar.gz | 3873c9e1730f1add1a247b761beb288e |
Anopheles gambiae | African malaria mosquito | anopheles_gambiae_mosquito_mirbase_22.1.tar.gz | cee0d904fddf048172af2d52ab6c3ff0 |
Apis mellifera | Honey bee | apis_mellifera_honey_bee_mirbase_22.1.tar.gz | 0eba0faf625b27a3fcde1f1491d7070b |
Arabidopsis lyrata | Arabidopsis | arabidopsis_lyrata_lyrate_rockcress_mirbase_22.1.tar.gz | d5b7b1a2a86221af95a7d6c4c127d544 |
Arabidopsis thaliana_ | Arabidopsis Thale cress | arabidopsis_thaliana_thale_cress_mirbase_22.1.tar.gz | ad88e8f9266bc59c9cb62482fd58aa0f |
Bombyx mori | Silkmoth | bombyx_mori_domestic_silkworm_mirbase_22.1.tar.gz | 662517981abc5c62f1c694fea46c3598 |
Bos taurus | Cow | bos_taurus_domestic_cattle_mirbase_22.1.tar.gz | 4855dd2275a1697b7f532c9d4a245daa |
Bovine leukemia virus | Bovine leukemia virus | bovine_leukemia_virus_bovine_leukemia_virus_mirbase_22.1.tar.gz | 44bb6ec211c6d8184f139dcb07f58dbc |
Brachypodium distachyon | Purple False Brome | brachypodium_distachyon_stiff_brome_mirbase_22.1.tar.gz | b4e28d0f951c214bbf8883f4382a0866 |
Branchiostoma floridae | Florida lancelet | branchiostoma_floridae_florida_lancelet_mirbase_22.1.tar.gz | dd545b086622bf5c5d853934dac51eab |
Brassica napus | Rapeseed, rape, colza | brassica_napus_rape_mirbase_22.1.tar.gz | 2151d5548ed56617ff3bc2bf156c2b7c |
Brassica rapa | Field mustard (wild turnip) | brassica_rapa_field_mustard_mirbase_22.1.tar.gz | f438a28c2788836886be8c5cbe7c6eb1 |
Brugia malayi | Malayan filarial worm | brugia_malayi_malayan_filaria_mirbase_22.1.tar.gz | b5e8ac76f64ea779ba4802080108ac7f |
Caenorhabditis brenneri | Nematode Roundworm | caenorhabditis_brenneri_nematode_worm_mirbase_22.1.tar.gz | 525673faaf776aca59ca7736677e71af |
Caenorhabditis briggsae | Nematode Roundworm | caenorhabditis_briggsae_nematode_worm_mirbase_22.1.tar.gz | 965518fc6bc5e70f5c46a46ae9ae4148 |
Caenorhabditis elegans | Nematode Roundworm | caenorhabditis_elegans_nematode_worm_mirbase_22.1.tar.gz | 5d3eeb636a4ae40b387fa058219321c8 |
Caenorhabditis remanei | Nematode Roundworm | caenorhabditis_remanei_nematode_worm_mirbase_22.1.tar.gz | 1163c71270b0017e243076da33177d5f |
Canis familiaris | Dog | 35f6158374f066fb805d9f40acdb8afd | |
Capitella teleta | Bristle worm | capitella_teleta_bristle_worm_mirbase_22.1.tar.gz | 9c7298e177d50e13946741f164c5ff1f |
Capra hircus | Goat | capra_hircus_goat_mirbase_22.1.tar.gz | 88b8589af928ceaf1a7ae7ea2439e75e |
Chlamydomonas reinhardtii | Green yeast | chlamydomonas_reinhardtii_green_yeast_mirbase_22.1.tar.gz | 2227d74b236800ffab56580b0491bfd6 |
Ciona intestinalis | Vase tunicate (sea squirt) | ciona_intestinalis_vase_tunicate_mirbase_22.1.tar.gz | cd975b7574d93344b0a0eca270707f00 |
Ciona savignyi | Solitary sea squirt | ciona_savignyi_pacific_transparent_sea_squirt_mirbase_22.1.tar.gz | 054af2dd879562db9543a1611dafed04 |
Citrus sinensis | Sweet orange | citrus_sinensis_sweet_orange_mirbase_22.1.tar.gz | 850293ed669aed73e88d3d9d822a49c5 |
Cricetulus griseus | Chinese hamster | cricetulus_griseus_chinese_hamster_mirbase_22.1.tar.gz | 0c4007a5486569198160cbc9554106d2 |
Culex quinquefasciatus_ | Southern house mosquito | culex_quinquefasciatus_southern_house_mosquito_mirbase_22.1.tar.gz | b972193a91a13be4b584f8f345e399fe |
Danio rerio | Zebrafish | danio_rerio_zebrafish_mirbase_22.1.tar.gz | 6ee3e67b40bb9cf54896724dc188c68c |
Daphnia pulex | Water flea | daphnia_pulex_common_water_flea_mirbase_22.1.tar.gz | 98aac0e88c440ee33a0f8dff48352b08 |
Dictyostelium discoideum | Slime mold | dictyostelium_discoideum__mirbase_22.1.tar.gz | 2b34a88b9eed8e8f18440fa1a2e6bc5f |
Drosophila ananassae | Fruit fly | drosophila_ananassae_fruit_fly_mirbase_22.1.tar.gz | 4dc9b3ca92146424983f96f67cfd5d6c |
Drosophila erecta | Fruit fly | drosophila_erecta_fruit_fly_mirbase_22.1.tar.gz | 892d3ea0faf1ffa019711239fdb971de |
Drosophila grimshawi | Hawaiian fruit fly | drosophila_grimshawi_hawaiian_fruit_fly_mirbase_22.1.tar.gz | ea8690707cf143e39f4645dc5b95eb25 |
Drosophila melanogaster | Fruit Fly | drosophila_melanogaster_fruit_fly_mirbase_22.1.tar.gz | 3c0d67bd222a316d61bb9aadc9cf82eb |
Drosophila mojavensis | Mojave fruit fly | drosophila_mojavensis_mojave_fruit_fly_mirbase_22.1.tar.gz | c59711e5180b73503730482000ed31dd |
Drosophila persimilis | Fruit Fly | drosophila_persimilis_fruit_fly_mirbase_22.1.tar.gz | e571975762cdbb2bb3fd0afc3d95ad8e |
Drosophila pseudoobscura | Fruit Fly | drosophila_pseudoobscura_fruit_fly_mirbase_22.1.tar.gz | 7a20e2ff7163a1d8560493e4e664e5e9 |
Drosophila sechellia_ | Fruit Fly | drosophila_sechellia_fruit_fly_mirbase_22.1.tar.gz | 117609abe10ee8de47a34d2708af0e47 |
Drosophila simulans | Fruit Fly | drosophila_simulans_fruit_fly_mirbase_22.1.tar.gz | 5010580c32624b4017e5621c0f2ec454 |
Drosophila virilis | Fruit Fly | drosophila_virilis_fruit_fly_mirbase_22.1.tar.gz | 01a52b3463b062435fcc29da23623416 |
Drosophila willistoni | Fruit Fly | drosophila_willistoni_fruit_fly_mirbase_22.1.tar.gz | df828bbefbf3540ac6d06fb671820b4c |
Drosophila yakuba | Fruit Fly | drosophila_yakuba_fruit_fly_mirbase_22.1.tar.gz | 6fac763ddd66e343a6f24fb1154574bf |
Echinococcus granulosus | Tapeworm (dog) | echinococcus_granulosus_dog_tapeworm_mirbase_22.1.tar.gz | 244c87ec9697becbc0bc67873d48895f |
Echinococcus multilocularis | Tapeworm (fox) | echinococcus_multilocularis_fox_tapeworm_mirbase_22.1.tar.gz | 431d5952b2d144f473ef5b18d23cf27d |
Ectocarpus siliculosus | Seaweed Brown algua | ectocarpus_siliculosus_brown_seaweed_mirbase_22.1.tar.gz | 6d4e5a553841974242803b77e775f143 |
Epstein barr virus | Epstein barr virus | epstein_barr_virus_epstein-barr_virus_mirbase_22.1.tar.gz | 21011c754ee2486d418912a6100bf346 |
Eptesicus fuscus | Big brown bat | eptesicus_fuscus_big_brown_bat_mirbase_22.1.tar.gz | 0803cad6b05cb913183a2009134e28de |
Equus caballus | Horse | equus_caballus_horse_mirbase_22.1.tar.gz | 1d6679a41ab89ebe5695d360f008b48e |
Fugu rubripes | Tiger puffer (Fish) | fugu_rubripes_torafugu_mirbase_22.1.tar.gz | 9bf9003b9cb6119f941725aad1ed6a50 |
Gallus gallus | Chicken | gallus_gallus_chicken_mirbase_22.1.tar.gz | 1d29c7e34356e87210dc3a377f50c13b |
Glycine max | Soybean | glycine_max_soybean_mirbase_22.1.tar.gz | 6acbb1691ed6185ed4454fe87e65db44 |
Gorilla gorilla | western gorilla | gorilla_gorilla_western_gorilla_mirbase_22.1.tar.gz | 703009c16c55c7c9f7e2e654fb595673 |
Gossypium raimondii | Peruvian cotton | gossypium_raimondii_peruvian_cotton_mirbase_22.1.tar.gz | e76669dcc82c4c7793f61c5eb77b6853 |
Heliconius melpomene | Postman butterfly | heliconius_melpomene_postman_butterfly_mirbase_22.1.tar.gz | c0eb6214bcc94fce87f2991bc72a56cf |
Herpes B virus | Macacine Herpes Virus | herpes_b_virus_monkey_b_virus_mirbase_22.1.tar.gz | 047cda49a47cf159ebfa0d0b5969a748 |
Hevea brasiliensis | Rubber tree | hevea_brasiliensis_rubber_tree_mirbase_22.1.tar.gz | 12679440c4e1ee961c8039eac062188a |
Homo sapiens | Human | homo_sapiens_human_mirbase_22.1.tar.gz | 80f0a7b8003d818f2376e9e79edacbd6 |
Hordeum vulgare | Barley | hordeum_vulgare_barley_mirbase_22.1.tar.gz | e4ad43a1f9d0a8521bc795154fac479a |
Human cytomegalovirus | Human cytomegalovirus (CMV) | human_cytomegalovirus_cmv_mirbase_22.1.tar.gz | 9a616325ec0eb24e35f46873165a3792 |
Ixodes scapularis | Deer tick_ | ixodes_scapularis_black-legged_tick_mirbase_22.1.tar.gz | 08140eb6ce126349e5e185c584770a6d |
Kaposi sarcoma-associated herpesvirus | Kaposi sarcoma associated herpesvirus (human herpesvirus 8) | kaposi_sarcoma-associated_herpesvirus_human_herpesvirus_8_mirbase_22.1.tar.gz | 2b708cea799ecf1caae31522a1eb63af |
Lottia gigantea | Owl limpet (Sea snail) | lottia_gigantea_owl_limpet_mirbase_22.1.tar.gz | 48edc485b269be95fd846041a3abd907 |
Lotus japonicus | Miyakogusa | lotus_japonicus_miyakogusa_mirbase_22.1.tar.gz | 4943facb1211d81bf30a0d1102d70675 |
Macaca mulatta | Rhesus macaque | macaca_mulatta_rhesus_monkey_mirbase_22.1.tar.gz | ba88225b8d6da67e315d742db6a0bc70 |
Malus domestica | Apple | malus_domestica_apple_mirbase_22.1.tar.gz | 8cac165da4873f0344e8fb17bc9d34ce |
Manduca sexta | Tobacco hornworm | manduca_sexta_tobacco_hornworm_mirbase_22.1.tar.gz | 7fb4a41a9039c9d265b462377b117106 |
Manihot esculenta | Cassava | manihot_esculenta_cassava_mirbase_22.1.tar.gz | 27bbb58c27454a2a19a224da9ded6f8a |
Mareks disease virus type 1 | Mareks disease virus type 1 | mareks_disease_virus_type_1_mareks_disease_virus_mirbase_22.1.tar.gz | 4ca88be4d9bdb7215c502ec6ac51efec |
Medicago truncatula | Barrel medic | medicago_truncatula_barrel_medic_mirbase_22.1.tar.gz | 069517e7f95260c27ce8635bab3c1024 |
Monodelphisdomestica | Gray short-tailed opossum | monodelphis_domestica_gray_short-tailed_opossum_mirbase_22.1.tar.gz | 1b5cf80517f90ba7328adc253558adc0 |
Mouse gammaherpesvirus 68 | Murid herpesvirus 4 | mouse_gammaherpesvirus_68_murine_gammaherpesvirus_68_mirbase_22.1.tar.gz | 8c95beada26606eaad40e17eab5ee63a |
Mus musculus | Mouse | mus_musculus_house_mouse_mirbase_22.1.tar.gz | 6e2704040cb43f8113c7f35ca370b1e9 |
Nasonia vitripennis | Jewel wasp | nasonia_vitripennis_jewel_wasp_mirbase_22.1.tar.gz | e6ca0083c2a6c2bd08573c5d7bf87ec6 |
Nematostella vectensis | Starlet Sea Anemone | nematostella_vectensis_starlet_sea_anemone_mirbase_22.1.tar.gz | 03d94a27bf1e97fe24d1ba106c7347ec |
Ophiophagushannah | King cobra | ophiophagus_hannah_king_cobra_mirbase_22.1.tar.gz | efbe11844587779068fd891be3078472 |
Ornithorhynchus anatinus | Platypus | ornithorhynchus_anatinus_platypus_mirbase_22.1.tar.gz | 055221fb3e142e8fdbfe20278fa4c0a8 |
Oryctolagus cuniculus | Rabbit | oryctolagus_cuniculus_rabbit_mirbase_22.1.tar.gz | aa7e9ad0b79348a2caa84de77215db63 |
Oryza sativa | Rice | oryza_sativa_asian_cultivated_rice_mirbase_22.1.tar.gz | 06cbf2985c8483d5155d0984f504549b |
Oryzias latipes | Japanese rice fish | oryzias_latipes_japanese_medaka_mirbase_22.1.tar.gz | d27193d2bf9256829c9c26f636d1c3ae |
Ovis aries | Sheep | ovis_aries_sheep_mirbase_22.1.tar.gz | 8337c653a49d63df198e78080af04033 |
Panagrellus redivivusar | microworm | panagrellus_redivivus_microworm_mirbase_22.1.tar.gz | afdd8f5d257b40af8d3ecac65f8c5633 |
Pan paniscus | Bonobo (Monkey) | pan_paniscus_bonobo_mirbase_22.1.tar.gz | b7e0555ef230aaf7fa9425c27ce6ae5f |
Pan troglodytes | Chimpanzee | pan_troglodytes_chimpanzee_mirbase_22.1.tar.gz | 4a1892a061b930c5eb160a9d860772bb |
Petromyzonmarinus | Sea Lamprey | petromyzon_marinus_sea_lamprey_mirbase_22.1.tar.gz | 9baedc21d9c3a290b84169b6d9b8bec9 |
Phaeodactylum tricornutum | Marine diatom | phaeodactylum_tricornutum_marine_diatom_mirbase_22.1.tar.gz | 36b74c23f8d56c314ffec77d16b79666 |
Phaseolus vulgaris | Common bean | phaseolus_vulgaris_common_bean_mirbase_22.1.tar.gz | ce3fb0e6d8a37dce390fb4c315a55a1e |
Physcomitrella patens | Spreading earthmoss | physcomitrella_patens_spreading_earthmoss_mirbase_22.1.tar.gz | d83b2b44da3a0d5d5792b3b951a5ce7d |
Picea abies | Norway spruce | picea_abies_norway_spruce_mirbase_22.1.tar.gz | 57b92e91a4d9c4bbfe7d4bb2a700b3c2 |
Plutella xylostella | Diamondbackmoth | plutella_xylostella_diamondback_moth_mirbase_22.1.tar.gz | 485f4a20f99f1d831c96f7aef95be82b |
Pongo pygmaeus | Bornean orangutan | pongo_pygmaeus_bornean_orangutan_mirbase_22.1.tar.gz | 53dcfcf78b3d43530dfc7e8d1957aab1 |
Populus trichocarpa | Western Balsam Poplar Tree | populus_trichocarpa_black_cottonwood_mirbase_22.1.tar.gz | 54120de258b44efbfaf4d38b1c6e78d7 |
Pristionchus pacificus | Shark-tooth nematode | pristionchus_pacificus_shark-tooth_nematode_mirbase_22.1.tar.gz | 5c543ec6133c815ffbbec6bc9b5c2fb9 |
Prunus persica_ | Peach | prunus_persica_peach_mirbase_22.1.tar.gz | 85e5577857e28e415e80fd07ad2f433c |
Pseudorabies virus aujeszkys | Pseudorabies virus (Aujeszkys´disease) | pseudorabies_virus_aujeszkys_disease_virus_mirbase_22.1.tar.gz | 1df45e40c6673350d184e58913a5f64e |
Rattus norvegicus | Rat | rattus_norvegicus_norway_rat_mirbase_22.1.tar.gz | bad3e1453783f927df5d4ac888455d48 |
Rhesus monkey rhadinovirus gamma | Rhesus monkey rhadinovirus (RRV) | rhesus_monkey_rhadinovirus_gamma-2_herpesvirus_mirbase_22.1.tar.gz | 803f9565cf6478093b12e68fe18037d7 |
Ricinus communis | Castor oil plant | ricinus_communis_castor_oil_plant_mirbase_22.1.tar.gz | f4cd1da4d37b54b4256e3bd934b6c719 |
Saccoglossus kowalevskii | Virginia acorn worm | saccoglossus_kowalevskii_acorn_worm_mirbase_22.1.tar.gz | cfc18a9400ce401491f4ad4b98b1bdc3 |
Sarcophilus_harrisii | Tasmanian devil | sarcophilus_harrisii_tasmanian_devil_mirbase_22.1.tar.gz | 8cabbb293b48facf9cff671f93ba138c |
Schistosoma japonicum | Bilharziose | schistosoma_japonicum_blood_fluke_mirbase_22.1.tar.gz | 3af6cace0a714cfdfbbdaa22afa28f82 |
Schistosoma mansoni | Saugwurm (trematode) | schistosoma_mansoni_blood_fluke_mirbase_22.1.tar.gz | 038ddec053f42d64a5a452429d7efe45 |
Schmidtea mediterranea | Freshwater planarian | schmidtea_mediterranea_freshwater_planarian_mirbase_22.1.tar.gz | 4552afe0c3275bec30cee2463bff42e3 |
Solanum lycopersicum | Tomato | solanum_lycopersicum_tomato_mirbase_22.1.tar.gz | e55b693a250eafb4cb7b091e1f241059 |
Solanum tuberosum | Potato | solanum_tuberosum_potato_mirbase_22.1.tar.gz | 21619bd92ecabb0ce2ddf411936ed299 |
Sorghum bicolor | Sorghum | sorghum_bicolor_sorghum_mirbase_22.1.tar.gz | bd643900a96af363e24b7bf889ffc58f |
Strongylocentrotus purpuratus | Purple Sea urchin | strongylocentrotus_purpuratus_purple_sea_urchin_mirbase_22.1.tar.gz | 2647d86f0109ec15a3146e3a37700257 |
Strongyloides ratti | Threadworm (rat) | strongyloides_ratti_rat_threadworm_mirbase_22.1.tar.gz | 188d40a9fcb6df074ea2149b59e36132 |
Sus scrofa | Pig | sus_scrofa_pig_mirbase_22.1.tar.gz | 3bd49ae86ef63a934125d80feeb9fbbc |
Taeniopygia_guttata zebra | Zebra finch | taeniopygia_guttata_zebra_finch_mirbase_22.1.tar.gz | a2a7f5995494d21d67a52565f9e9246d |
Tetraodon nigroviridis | Green_puffer (fish) | tetraodon_nigroviridis_spotted_green_pufferfish_mirbase_22.1.tar.gz | d8d1878a89b347a96096c0db73fbd4e9 |
Tribolium castaneum | Red flour beetle | tribolium_castaneum_red_flour_beetle_mirbase_22.1.tar.gz | fe06a535718e329d3096b76256e4225f |
Triticum aestivum | Bread Wheat | triticum_aestivum_bread_wheat_mirbase_22.1.tar.gz | 4e3d9af6b39b3f14947e71e595e15e0c |
Tupaia chinensis | Chinese tree shree | tupaia_chinensis_chinese_tree_shrew_mirbase_22.1.tar.gz | 83190201d9d10851569bcaa0d965673a |
Vitis vinifera_ | Grape vine | vitis_vinifera_grape_vine_mirbase_22.1.tar.gz | 4b08b3d5b82c50b53a9142ea058b8586 |
Xenopus laevis | African clawed frog | xenopus_laevis_african_clawed_frog_mirbase_22.1.tar.gz | c7494d83a7b5ba6c8408d87cd647fba0 |
Xenopus tropicalis | Tropical clawed frog | xenopus_tropicalis_tropical_clawed_frog_mirbase_22.1.tar.gz | a313e5bf1347ae2e67292e70b64ad0f6 |
Zea mays | Maize/Corn | zea_mays_maize_mirbase_22.1.tar.gz | 29ec70e7ba936ae2ac52b7f7aaad51cb |